PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca54524.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 401aa    MW: 45501.1 Da    PI: 5.3713
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca54524.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.51.2e-0998191290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 f  +YA + GF+v +++++ +    e+ ++  + ++ gk+e++ +          +  ++r+++++ tgCka+++ + + d+ +++++++leHnHel 
  Dca54524.1  98 FIISYALRKGFEVFTRSNSLK---AEFRNAGVTRKCGGKKEPRYHMmerlrlackKGGQKRSEKSNVTGCKACFEGTIQ-DDGFVIKTVHLEHNHELD 191
                 5568*********99988776...33334444444455555555556699999988889999999**********9999.899*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-798192IPR004330FAR1 DNA binding domain
PfamPF105512.0E-16312373IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSGNNDVWFD LNEYYDEEFG GSEGFFDENE GNEIELNSNG GSIEPVENSI EEVVSTEESP  60
NPVEEAVNAV EGGNDTNDVV VDPTVGMVFP NCDSFAEFII SYALRKGFEV FTRSNSLKAE  120
FRNAGVTRKC GGKKEPRYHM MERLRLACKK GGQKRSEKSN VTGCKACFEG TIQDDGFVIK  180
TVHLEHNHEL DPANSRFKVS SRTITDYFKE RIVLNDRAGI PITKNFNAMV IEAGGHENLP  240
FNHRDLRNLV NLERRLERIN GDAAALEEYF VKMKTENPDF FYAIKKDNDG RLQNVFWADA  300
RCRAMFKVFG DVVTYDTTFL CNRYRLPFSP FIGVNHHGNS ICFAAALITN EDTETFIWVF  360
ERWLECMGKA PPVIRLLGQA NARHPHPLKK DPSLRGLTFR T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-41FAR1-related sequence 5